PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_72949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | Dof | ||||||||
Protein Properties | Length: 263aa MW: 26612.6 Da PI: 9.2728 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 102.3 | 2.8e-32 | 81 | 135 | 5 | 59 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++cprC s+ntkfCyynnys +qPryfC+aCrr+Wt+GG+lr+vPvGggr++++ MLOC_72949.1 81 PRQCPRCRSANTKFCYYNNYSRKQPRYFCRACRRHWTEGGTLRDVPVGGGRKNRR 135 679**********************************************976554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.4E-29 | 82 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.385 | 82 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 84 | 120 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-16 | 89 | 127 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MASPFLPGSS SSSASSPLSY LIPRQPPPSS VVAQGFSCGA LVQQAGLYGG VGVSAAGGVE 60 AVEVRQGGRH AGHPPLPRPP PRQCPRCRSA NTKFCYYNNY SRKQPRYFCR ACRRHWTEGG 120 TLRDVPVGGG RKNRRNGGGG AKGGAKAPST VTAEVSTAAT TAIQGSGAGA LAGAVDAFIP 180 ADILRQMLSQ SASFTASGGG GGYGIDLSAW QQMTGAAAAP QGGSDVGEVG GTAPAADANC 240 GTGAQYWSGW NLQDDMPGFD GTF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_72949.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM084361 | 0.0 | AM084361.1 Hordeum vulgare subsp. vulgare dof13 gene for dof zinc finger protein 13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571940.1 | 1e-49 | dof zinc finger protein 1 | ||||
TrEMBL | M0YU65 | 0.0 | M0YU65_HORVV; Uncharacterized protein | ||||
STRING | MLOC_72949.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.1 | 1e-18 | Dof family protein |