PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_72002.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 311aa    MW: 33058.8 Da    PI: 5.3735
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_72002.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.99.3e-383791660
        zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                   +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  MLOC_72002.1 37 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 91
                  68***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-312291IPR003851Zinc finger, Dof-type
PfamPF027017.6E-323791IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MLSSHCESML AYAAAAAGRR AMLVDPRRYR PNVEVAPNCP RCDSPNTKFC YYNNYSLSQP  60
RYFCKGCRRY WTKGGSLRNV PVGGGCRKNR RGKPVRPLAD TASENHGAAA FSHQFHGPVR  120
PDLLLEGMVG NPAELGQPAS ADKPTEAAEG STIDLAVLYS KFLSHQSHAE QRAVGPESAD  180
PSSGSSTEMS PPALSSPGQH GFGEICGAPS STEPGETTML ECGDARAQAL GELNFGVDQS  240
CYDSLGLPAD GGDLMLPSAW GQEAKYEPFN SLPEEDAMSL HEGVAGGYDV WSKVMGCQGL  300
EAALSAGFDR C
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_72002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843580.0AM084358.1 Hordeum vulgare subsp. vulgare dof10 gene for dof zinc finger protein 10, exon 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158979.10.0dof zinc finger protein DOF1.8-like
TrEMBLA0A287G8J90.0A0A287G8J9_HORVV; Uncharacterized protein
TrEMBLA5HWF90.0A5HWF9_HORVV; Dof zinc finger protein 10
STRINGMLOC_72002.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.13e-35Dof family protein