PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71587.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family M-type_MADS
Protein Properties Length: 323aa    MW: 35148.7 Da    PI: 6.6036
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71587.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.45.8e-11951143
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                  k i+n+s+r  t+  Rr+ +  KA  LS++C+a+++v++++++
  MLOC_71587.1  9 KYIDNESRRRRTLETRRKNLASKAGKLSIMCNAKACVLVYGEE 51
                  579**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.06E-15175IPR002100Transcription factor, MADS-box
SMARTSM004329.7E-12160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.657161IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-5323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-71151IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-52338IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MGRKKIALKY IDNESRRRRT LETRRKNLAS KAGKLSIMCN AKACVLVYGE EDAAPNVYSS  60
HPGAVDLLNR YKTMPEGWFK TAVNQEDFLC KQLNKLQLEE NKVRDPEIRI LLHKAMLGSD  120
LSGLKVDEHA SVSSRLDEIL KSMGESIAKI SGQPPIMQPH APYVPDNMNM GSSAMHQASL  180
PAPYVTDNMD MGSPTMNHAP SSTPYVIENV DVGSPVMNQE PSPIPYAIGS MHMGFPAMYQ  240
VQPQQVGWLD TVRSGRDLDV VAHNGYSTNG QDGAGTSANG HDGAGTSANT GSSGGMKPWV  300
VGFNWQSGGV DPEESSWNLF PPM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218RKKIALKYIDNESRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71587.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770890.0AK377089.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3148A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170132.11e-157agamous-like MADS-box protein AGL80
TrEMBLA0A287V1E20.0A0A287V1E2_HORVV; Uncharacterized protein
STRINGMLOC_71587.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-13AGAMOUS-like 80