PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_71395.3

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 128aa MW: 14586.4 Da PI: 4.5413

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71395.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.5	2.1e-17	25	115	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 f k +++s+v + +l lp +f++++ k ++ t+tl de+ +++e k+ ++++ l++GW +F+ ++ +++gD+ vF+l++ ++f +v+++ MLOC_71395.3 25 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPTTF--KVHII 113 8999******************99533..4459***********..555555..9*********************986777..99999 PP -S CS B3 98 rk 99 r+ MLOC_71395.3 114 RA 115 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.2E-20	16	116	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.16E-23	18	115	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.84E-24	23	114	No hit	No description
Pfam	PF02362	8.9E-16	25	115	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.406	25	116	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-16	25	116	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MKARMEAASK AEELESQLDP EFPSFMKRML HSHVVRGFWL GLPSHFCDTY LPKNDCTITL 60 VDEKDEEFES KYLAYKKGLS GGWAGFALDH VIRDGDSTVF QLIKPTTFKV HIIRATVGDD 120 DDEEEEAE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71395.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249804	0.0	AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149937.1	2e-87	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	9e-71	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A446SEY2	1e-86	A0A446SEY2_TRITD; Uncharacterized protein
STRING	MLOC_71395.2	5e-91	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	4e-46	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]