PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_71376.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 446aa    MW: 48503.3 Da    PI: 9.8528
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_71376.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA35.61.3e-11110144135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C +C++ +Tp+ R+gp g  tLCnaCG+ y k+g+
  MLOC_71376.1 110 CLHCKAVETPQRRSGPMGRGTLCNACGVWYSKNGT 144
                   99******************************997 PP
2GATA32.61.1e-10200234135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C +Cg+++ plW +g+ g +++C aCG++y+k ++
  MLOC_71376.1 200 CLHCGSSEPPLWIEGSMGRREVCTACGMRYKKGRM 234
                   99******************************986 PP
3GATA54.81.3e-17304338135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++Cg+++Tp+WR+gp g  tLCnaCG++yr  +l
  MLOC_71376.1 304 CQHCGSSETPQWREGPKGRGTLCNACGVRYRQGRL 338
                   *******************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.7E-9104158IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.499104143IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.57E-10106146No hitNo description
Gene3DG3DSA:3.30.50.101.8E-11108150IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.09E-8109154No hitNo description
PfamPF003201.3E-8110144IPR000679Zinc finger, GATA-type
SMARTSM004018.6E-6194244IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.673194230IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.2E-8195233IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-7196236No hitNo description
CDDcd002022.38E-6199236No hitNo description
PfamPF003205.9E-9200233IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-14296360No hitNo description
PROSITE profilePS5011412.756298334IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-16298352IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.2E-14302336IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.01E-13303354No hitNo description
PfamPF003201.4E-15304338IPR000679Zinc finger, GATA-type
PROSITE patternPS003440304329IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAGGGGVGGK EDGGTEPLLL TVLALPATAL PAVVSRLEAA VPRKARSYLP RNVPSAWWSL  60
RIPFIQPLPP AGDPTNEEEG RRFPRPQRVQ VVPSLDPGSA DKPPKRLRRC LHCKAVETPQ  120
RRSGPMGRGT LCNACGVWYS KNGTLPEHRP VASPIVDSPL ESQIWEPDVP GAIYLVRKSA  180
TERRPPKTEA APAPRPGTSC LHCGSSEPPL WIEGSMGRRE VCTACGMRYK KGRMLPECRP  240
AGCSVTDSWQ KSPIINSPPE SPIWEPEAPP AVHLPRKPSK KKNRRRSRSQ APSVPWPANK  300
GKRCQHCGSS ETPQWREGPK GRGTLCNACG VRYRQGRLLP EYRPMASPTF VPSKHANSHR  360
KVLQLHRTRQ SNDEHPSPLP ADRVANLSPI LDDLPTTSTA GLASENPADT LGYTDNPINA  420
PSSLDSLLFD GPSAPLIVES EDFVIS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_71376.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550520.0AK355052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152088.10.0uncharacterized protein LOC109737355 isoform X1
RefseqXP_020152090.10.0uncharacterized protein LOC109737355 isoform X2
TrEMBLA0A287QVD70.0A0A287QVD7_HORVV; Uncharacterized protein
STRINGMLOC_71376.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-30GATA transcription factor 9