PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_71305.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 146aa MW: 16140.3 Da PI: 5.577 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40 | 7e-13 | 23 | 102 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f v+ + +v k +l++p +f ++ +t ++ +g sW + + +++ + l++GW +F+ +n+L++gD +vF+l + MLOC_71305.1 23 FTVVMCKTHVQKPYLLIIPTHFQRRLPAR----RTAVVLRCRGSSWIMSY--SGHTKLKNLAAGWADFAIDNRLQVGDGCVFELLS 102 6778899999999*********9887533....47899999*********..88888888***********************653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.1E-17 | 17 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-17 | 18 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.39E-15 | 21 | 121 | No hit | No description |
Pfam | PF02362 | 2.1E-10 | 23 | 102 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 23 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MVLQQGAGED DETTPLSGDR PFFTVVMCKT HVQKPYLLII PTHFQRRLPA RRTAVVLRCR 60 GSSWIMSYSG HTKLKNLAAG WADFAIDNRL QVGDGCVFEL LSGDARDGGE GEVVLEVQVL 120 RGHLPEPEDL TTKGESADEP MANYHC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_71305.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184539.1 | 3e-76 | B3 domain-containing protein Os06g0112300-like | ||||
Swissprot | Q9LHY9 | 2e-38 | Y6112_ORYSJ; B3 domain-containing protein Os06g0112300 | ||||
TrEMBL | M0YNY9 | 1e-105 | M0YNY9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_71305.1 | 1e-106 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12046 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 9e-08 | B3 family protein |
Publications ? help Back to Top | |||
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