PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_71104.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 154aa MW: 16935 Da PI: 9.0804

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_71104.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.4	1.3e-12	30	89	3	62
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e +r rrk++NRe+ArrsR RK++ ++ L v++L+++ +++ l + +++ +l+++ MLOC_71104.2 30 EKRRKRRKESNRESARRSRVRKQQHLDDLSSQVDQLKNQSQQMNMVLGMTTQNLVALQAQ 89 5689*************************************9998888777776666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.4E-11	28	92	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.645	30	93	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-9	30	78	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-9	32	89	No hit	No description
SuperFamily	SSF57959	3.87E-11	32	87	No hit	No description
CDD	cd14702	1.58E-14	33	72	No hit	No description
PROSITE pattern	PS00036	0	35	50	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MSSGTSFGSS QGTRSSRSAE DCADLRAQME KRRKRRKESN RESARRSRVR KQQHLDDLSS 60 QVDQLKNQSQ QMNMVLGMTT QNLVALQAQN SVMQTQKMEL ESRLCALGEI ICCMNSITNA 120 ANPAAAMGAT ASGAYDVFGA GGTWSQPIDL YQCF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	36	KRRKRRK
2	32	37	RKRRKE
3	44	50	RRSRVRK
4	44	51	RRSRVRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_71104.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364428	0.0	AK364428.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025A24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020172439.1	1e-105	bZIP transcription factor 44-like
TrEMBL	F2DKL0	1e-109	F2DKL0_HORVV; Predicted protein
STRING	MLOC_71104.2	1e-110	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3740	32	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	5e-11	basic leucine-zipper 44