PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70676.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 199aa    MW: 22691.1 Da    PI: 9.4974
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70676.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2368.7e-7361615170
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+   q  l++++h         +e+ k ++ +++ n+  + ++s+++  ++
  MLOC_70676.3   6 APPEHVCYVHCNFCNTILAVSVPSNSMLNMVTVRCGHCTSLLSVNLRGLIQsPLPVQDH--------SQENFKAQNISFHGNYPDYGTSSKYRMPMM 94 
                   679*******************************************9987515888887........788999999999999999999888887777 PP

         YABBY 101 lsened.eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +s+++d e++ +    +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl
  MLOC_70676.3  95 FSTKSDqEHMLH----MRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161
                   766555055555....8****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.7E-727161IPR006780YABBY protein
SuperFamilySSF470951.11E-899155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-5106155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MSAQIAPPEH VCYVHCNFCN TILAVSVPSN SMLNMVTVRC GHCTSLLSVN LRGLIQSPLP  60
VQDHSQENFK AQNISFHGNY PDYGTSSKYR MPMMFSTKSD QEHMLHMRPP EKRQRVPSAY  120
NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSNESSKKL DETIATPIPQ  180
KVQVMKKVMM AERSFGWVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70676.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582210.0AK358221.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155668.11e-130protein YABBY 2-like isoform X2
SwissprotQ10FZ71e-109YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A287S8T31e-148A0A287S8T3_HORVV; Uncharacterized protein
STRINGMLOC_70676.21e-148(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.21e-64YABBY family protein