PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_70676.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 21114.1 Da PI: 9.2332 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 236.3 | 6.9e-73 | 6 | 161 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq.llaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l++++h +e+ k ++ +++ n+ + ++s+++ ++ MLOC_70676.1 6 APPEHVCYVHCNFCNTILAVSVPSNSMLNMVTVRCGHCTSLLSVNLRGLIQsPLPVQDH--------SQENFKAQNISFHGNYPDYGTSSKYRMPMM 94 679*******************************************9987515888887........788999999999999999999888887777 PP YABBY 101 lsened.eevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+++d e++ + +rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWahfP+ihfgl MLOC_70676.1 95 FSTKSDqEHMLH----MRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNIHFGL 161 766555055555....8****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-72 | 7 | 161 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.69E-9 | 99 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.6E-5 | 106 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSAQIAPPEH VCYVHCNFCN TILAVSVPSN SMLNMVTVRC GHCTSLLSVN LRGLIQSPLP 60 VQDHSQENFK AQNISFHGNY PDYGTSSKYR MPMMFSTKSD QEHMLHMRPP EKRQRVPSAY 120 NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHFPNIHFG LGSNESSKKL DETIATPIPQ 180 KVQGLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_70676.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358221 | 0.0 | AK358221.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071G06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155668.1 | 1e-132 | protein YABBY 2-like isoform X2 | ||||
Swissprot | Q10FZ7 | 1e-110 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | M0YM09 | 1e-138 | M0YM09_HORVV; Uncharacterized protein | ||||
STRING | MLOC_70676.2 | 1e-135 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 6e-65 | YABBY family protein |