PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_70581.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRF

Protein Properties

Length: 290aa MW: 31413.2 Da PI: 4.6696

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_70581.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71.1	1.3e-22	218	258	1	41
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + MLOC_70581.2 218 EPEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQ 258 69***********************************9765 PP
2	QLQ	54	5.2e-19	152	187	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k MLOC_70581.2 152 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 187 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	151	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.0E-12	152	186	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	21.018	152	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.126	218	262	IPR014977	WRC domain
Pfam	PF08879	1.4E-18	219	256	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MPLSSFTLIA RAPYRRPFPS PSDPIPKIPF CRLLLRGPSA TMAAEGEDKN DTDSVGGAGG 60 GVENTLEAAE EAILQAVGQE PGQELVGEAE ESADREGNGD DARKEDSGCK DLVLVEDHVL 120 VEDPEEAAVA TAALQEEMRV LLASVPEGAG ASFTAMQLQE LEQQSRVYQY MAARVPVPTH 180 LVFPIWKSVT GASSEGAQNY PTLMGLATLC LDFGKSLEPE PGRCRRTDGK KWRCWRKTIP 240 NEKYCERHMH RGRKRPVQVI VEDDEPDSAS GSKSSSGKVT EGGKKTDDKS

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_70581.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249458	0.0	AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020153628.1	1e-154	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-121	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A287I1H6	0.0	A0A287I1H6_HORVV; Uncharacterized protein
STRING	MLOC_70581.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-30	growth-regulating factor 2

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]