PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_70581.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRF | ||||||||
Protein Properties | Length: 289aa MW: 31342.1 Da PI: 4.6696 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71.1 | 1.3e-22 | 217 | 257 | 1 | 41 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrk 41 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + MLOC_70581.1 217 EPEPGRCRRTDGKKWRCWRKTIPNEKYCERHMHRGRKRPVQ 257 69***********************************9765 PP | |||||||
2 | QLQ | 54 | 5.2e-19 | 151 | 186 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k MLOC_70581.1 151 SFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 186 8*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-8 | 150 | 186 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.018 | 151 | 186 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.0E-12 | 151 | 185 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 22.126 | 217 | 261 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.4E-18 | 218 | 255 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MPLSSFTLIA RAPYRRPFPS PSDPIPKIPF CRLLLRGPSA TMAAEGEDKN DTDSVGGAGG 60 GVENTLEAAE EAILQAVGQE PGQELVGEAE ESADREGNGD DARKEDSGCK DLVLVEDHVL 120 VEDPEEAVAT AALQEEMRVL LASVPEGAGA SFTAMQLQEL EQQSRVYQYM AARVPVPTHL 180 VFPIWKSVTG ASSEGAQNYP TLMGLATLCL DFGKSLEPEP GRCRRTDGKK WRCWRKTIPN 240 EKYCERHMHR GRKRPVQVIV EDDEPDSASG SKSSSGKVTE GGKKTDDKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_70581.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249458 | 0.0 | AK249458.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf29g18, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153628.1 | 1e-155 | growth-regulating factor 11-like | ||||
Swissprot | A5HEG9 | 1e-123 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
TrEMBL | A0A287I1I5 | 0.0 | A0A287I1I5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_70581.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 6e-30 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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