PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_698.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 306aa    MW: 34576 Da    PI: 4.7151
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_698.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.39.2e-12232305170
        FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 
                 +f+n+Y++ +GF v++ + k++   krn+eit+ t++C+k+gk++e + +  +  r++ +  +t+Ck  l+++k
  MLOC_698.2 232 EFFNFYSHVAGFCVTTVAVKRTsskKRNNEITQITMKCNKHGKTKEVEAEsVVPIRKSIVIAKTNCKVVLVLSK 305
                 6***********8876655554455999****************9988775788899999*********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-10232305IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEEEQGHEG GRITSREDTP YMIWNTQEPT NASNGTGRNI KGQSLYLEHD EIDFLESGSC  60
SYTELLHGGS FSYTELLHAQ MYQSMTNIME CDRTDLDNKF NTPEAGEYIH SEQNESPTNQ  120
AGAENPWNIS LFDSMELDKV NDEQNYQQPS TFAREEQQFP SEESEGTAAS EKQKGTHNSR  180
QGQEEEFLNE VDIHNFLGNE EASAKEGNLR NVDSVTKPAV GMRFKSKQEG QEFFNFYSHV  240
AGFCVTTVAV KRTSSKKRNN EITQITMKCN KHGKTKEVEA ESVVPIRKSI VIAKTNCKVV  300
LVLSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_698.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287XMR20.0A0A287XMR2_HORVV; Uncharacterized protein
STRINGMLOC_698.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2306624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.45e-06FAR1-related sequence 2