PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_698.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family FAR1
Protein Properties Length: 277aa    MW: 31345.5 Da    PI: 4.8554
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_698.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.57.7e-12203276170
        FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 
                 +f+n+Y++ +GF v++ + k++   krn+eit+ t++C+k+gk++e + +  +  r++ +  +t+Ck  l+++k
  MLOC_698.1 203 EFFNFYSHVAGFCVTTVAVKRTsskKRNNEITQITMKCNKHGKTKEVEAEsVVPIRKSIVIAKTNCKVVLVLSK 276
                 6***********8876655554455999****************9988775788899999*********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-10203276IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEEEEQGHEG GRITSREDTP YMIWNTQSGS CSYTELLHGG SFSYTELLHA QMYQSMTNIM  60
ECDRTDLDNK FNTPEAGEYI HSEQNESPTN QAGAENPWNI SLFDSMELDK VNDEQNYQQP  120
STFAREEQQF PSEESEGTAA SEKQKGTHNS RQGQEEEFLN EVDIHNFLGN EEASAKEGNL  180
RNVDSVTKPA VGMRFKSKQE GQEFFNFYSH VAGFCVTTVA VKRTSSKKRN NEITQITMKC  240
NKHGKTKEVE AESVVPIRKS IVIAKTNCKV VLVLSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_698.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287XMR21e-175A0A287XMR2_HORVV; Uncharacterized protein
STRINGMLOC_698.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.45e-06FAR1-related sequence 2