PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69727.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 125aa    MW: 14024.7 Da    PI: 4.6649
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69727.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.8e-12531192183
                   HH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
            B3  21 kfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                   k ae+h  ++k+  ++ + +ed  ++++W++++++  ++ks++y+l+ ++ +Fv++n+L+egDf+v++
  MLOC_69727.4  53 KEAETHlpELKTGDGISIPIEDiGTSQVWSMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVLY 119
                   457777888889999999****7777*******99777777777777.******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-1652124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1453121IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-957119IPR003340B3 DNA binding domain
PROSITE profilePS508638.55770125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MNGSSSLSID LGVDFLLDFS DFASVSIHGS SCLSADRSVA TKKCLFFHGW FQKEAETHLP  60
ELKTGDGISI PIEDIGTSQV WSMRYRFWPN NKSRMYLLEN TGDFVRSNEL QEGDFIVLYS  120
DVKSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-25521252497B3 domain-containing transcription factor FUS3
6j9b_D3e-25521252497B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69727.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4317031e-142AJ431703.1 Hordeum vulgare vip gene for viviparous-1 protein, exons 1-6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155421.12e-45B3 domain-containing protein VP1 isoform X1
SwissprotP373981e-42VIV_ORYSJ; B3 domain-containing protein VP1
TrEMBLA0A446NZJ81e-58A0A446NZJ8_TRITD; Uncharacterized protein
TrEMBLM7Z5Z01e-58M7Z5Z0_TRIUA; B3 domain-containing protein VP1
STRINGTRIUR3_22986-P12e-59(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.14e-40B3 family protein
Publications ? help Back to Top
  1. Espelund M,Bekele E,Holst-Jensen A,Jakobsen KS,Nordal I
    A molecular genetic analysis of Eragrostis tef (Zucc.) Trotter: non-coding regions of chloroplast DNA, 18S rDNA and the transcription factor VP1.
    Hereditas, 2000. 132(3): p. 193-202
    [PMID:11075514]
  2. Gampala SS,Hagenbeek D,Rock CD
    Functional interactions of lanthanum and phospholipase D with the abscisic acid signaling effectors VP1 and ABI1-1 in rice protoplasts.
    J. Biol. Chem., 2001. 276(13): p. 9855-60
    [PMID:11139577]
  3. Carrari F, et al.
    Cloning and expression of a sorghum gene with homology to maize vp1. Its potential involvement in pre-harvest sprouting resistance.
    Plant Mol. Biol., 2001. 45(6): p. 631-40
    [PMID:11430426]
  4. Hagiwara K,Rao S,Scott SW,Carner GR
    Nucleotide sequences of segments 1, 3 and 4 of the genome of Bombyx mori cypovirus 1 encoding putative capsid proteins VP1, VP3 and VP4, respectively.
    J. Gen. Virol., 2002. 83(Pt 6): p. 1477-82
    [PMID:12029163]
  5. Zhao SL,Liang CY,Hong JJ,Peng HY
    Genomic sequence analyses of segments 1 to 6 of Dendrolimus punctatus cytoplasmic polyhedrosis virus.
    Arch. Virol., 2003. 148(7): p. 1357-68
    [PMID:12827465]
  6. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  7. Suzuki N, et al.
    Molecular analysis of rice dwarf phytoreovirus segment S1: interviral homology of the putative RNA-dependent RNA polymerase between plant- and animal-infecting reoviruses.
    Virology, 1992. 190(1): p. 240-7
    [PMID:1529532]
  8. Fan J, et al.
    Short, direct repeats (SDRs)-mediated post-transcriptional processing of a transcription factor gene OsVP1 in rice (Oryza sativa).
    J. Exp. Bot., 2007. 58(13): p. 3811-7
    [PMID:18057047]
  9. Sugimoto K, et al.
    Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(13): p. 5792-7
    [PMID:20220098]
  10. Sharoni AM, et al.
    Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice.
    Plant Cell Physiol., 2011. 52(2): p. 344-60
    [PMID:21169347]
  11. Kumar S,Jiang S,Jami SK,Hill RD
    Cloning and characterization of barley caryopsis FCA.
    Physiol Plant, 2011. 143(1): p. 93-106
    [PMID:21645000]
  12. Cao G, et al.
    Characterization of the complete genome segments from BmCPV-SZ, a novel Bombyx mori cypovirus 1 isolate.
    Can. J. Microbiol., 2012. 58(7): p. 872-83
    [PMID:22712678]
  13. Ye H,Beighley DH,Feng J,Gu XY
    Genetic and physiological characterization of two clusters of quantitative trait Loci associated with seed dormancy and plant height in rice.
    G3 (Bethesda), 2013. 3(2): p. 323-31
    [PMID:23390608]
  14. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  15. Lata C, et al.
    Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.).
    PLoS ONE, 2014. 9(11): p. e113092
    [PMID:25409524]
  16. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]
  17. Li S, et al.
    Facilitation of rice stripe virus accumulation in the insect vector by Himetobi P virus VP1.
    Viruses, 2015. 7(3): p. 1492-504
    [PMID:25807055]
  18. Mukhopadhyay P,Tyagi AK
    OsTCP19 influences developmental and abiotic stress signaling by modulating ABI4-mediated pathways.
    Sci Rep, 2015. 5: p. 9998
    [PMID:25925167]
  19. Du W, et al.
    Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.
    Plant Biol (Stuttg), 2015. 17(6): p. 1156-64
    [PMID:26205956]
  20. Zhang X,Sun J,Cao X,Song X
    Epigenetic Mutation of RAV6 Affects Leaf Angle and Seed Size in Rice.
    Plant Physiol., 2015. 169(3): p. 2118-28
    [PMID:26351308]
  21. Duan YB, et al.
    Identification of a regulatory element responsible for salt induction of rice OsRAV2 through ex situ and in situ promoter analysis.
    Plant Mol. Biol., 2016. 90(1-2): p. 49-62
    [PMID:26482477]
  22. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]
  23. Chen L, et al.
    Expansion and stress responses of AP2/EREBP superfamily in Brachypodium distachyon.
    Sci Rep, 2016. 6: p. 21623
    [PMID:26869021]
  24. Li Z, et al.
    Serine carboxypeptidase 46 Regulates Grain Filling and Seed Germination in Rice (Oryza sativa L.).
    PLoS ONE, 2016. 11(7): p. e0159737
    [PMID:27448032]
  25. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  26. Hattori T,Terada T,Hamasuna S
    Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1.
    Plant J., 1995. 7(6): p. 913-25
    [PMID:7599651]
  27. Hollung K,Espelund M,Schou K,Jakobsen KS
    Developmental, stress and ABA modulation of mRNA levels for bZip transcription factors and Vp1 in barley embryos and embryo-derived suspension cultures.
    Plant Mol. Biol., 1997. 35(5): p. 561-71
    [PMID:9349278]
  28. Schultz TF,Medina J,Hill A,Quatrano RS
    14-3-3 proteins are part of an abscisic acid-VIVIPAROUS1 (VP1) response complex in the Em promoter and interact with VP1 and EmBP1.
    Plant Cell, 1998. 10(5): p. 837-47
    [PMID:9596641]