PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_69727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 681aa MW: 72364.5 Da PI: 7.6782 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.1 | 5.8e-17 | 528 | 623 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +kvl++sdv+++gr+vlpk+ e+h ++k+ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v++ ++ +++++ MLOC_69727.1 528 QKVLKQSDVGTLGRIVLPKEA-ETHlpELKTGDGISIPIEDiGTSQVWSMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVLY--SDvKSGKY 620 79****************995.7888*99999*********7777*******99777777777777.********************..55588877 PP EEE CS B3 93 vvk 95 +++ MLOC_69727.1 621 LIR 623 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.6E-25 | 521 | 631 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-19 | 526 | 621 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.982 | 527 | 628 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-14 | 527 | 628 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.8E-14 | 528 | 622 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MDASAGSSPP RHPQGSAPRR GKGPAVEIRH GEDDFMFAQD TFPALPDFPC LSSPSSSNFS 60 SSSSSNSSSA FAAPAGVGGR GGEGTRGEPS EPAAAGDGVD DLSDIDHLLD FASINDDVPW 120 DDEPLFPDVG MMLEDVISEQ QQQQQQHPLA GYGAGGRVAS DAAGGGGEDA FMGGGGSGSA 180 ADDLPRFFME WLTNNRDCIS AEDLRSIRLR RSTIEAAAAR LGGGRQGTMQ LLKLILTWVQ 240 NHHLQKKRPR VGAMDQEAPP AGGQLPSPGA NPSYEFPTET GAAAATSWMP YQAFSPTASY 300 GGEAMYPFQQ GCSTSSVVVS SQPFSPPAAA DMHAGAWPLQ YAAFVPAGAT SAGTQTYPMP 360 PPGPVPQPFA APGFAGQFPQ RMEPAATREA RKKRMARQRR LSCLQQQRSQ QLNLSQIQTG 420 GFPQEPSPRA AHSAPVWGGH WSPPAVQAQP HGQLMIQVPN PLSTKSNSSR QKQQKPSPDA 480 AARPPSGGAA SQQRQGQAAA SDKQRQQGAS RTAAAPPAGD KNLRFLLQKV LKQSDVGTLG 540 RIVLPKEAET HLPELKTGDG ISIPIEDIGT SQVWSMRYRF WPNNKSRMYL LENTGDFVRS 600 NELQEGDFIV LYSDVKSGKY LIRGVKVRAA QELAKHKNGS PEKGGASEVK AEDGGCKEKS 660 PHGVRRSRQE AASMNQMAVS I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-34 | 523 | 633 | 1 | 112 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-34 | 523 | 633 | 1 | 112 | B3 domain-containing transcription factor FUS3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_69727.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375797 | 0.0 | AK375797.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3105A14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155422.1 | 0.0 | B3 domain-containing protein VP1 isoform X2 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | M0YIR5 | 0.0 | M0YIR5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_69727.2 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 7e-56 | B3 family protein |