PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_69675.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 495aa    MW: 54214.6 Da    PI: 6.0777
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_69675.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34831752103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++++++l+ +isw   gnsfvv+++++fa++vLp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h+ F +g+k+ll++i 
  MLOC_69675.2  83 FLSKTYDLVSEPQLDGVISWGPAGNSFVVWNPSTFARDVLPHNFKHNNFSSFVRQLNTYGFRKVHADR---------WEFAHEGFLRGSKHLLKTIV 170
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++s+
  MLOC_69675.2 171 RRRSS 175
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.62E-3378172IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3779172IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-5579172IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3183172IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-1783106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-17121133IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340122146IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-17134146IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDHTHTGTNT TPAAVTASAA DSMDTALLLE PKLEMLQQQL PSPPGHYAAL DHHLIPPPPA  60
LVVPCEPPRP LEALLQGQQL PPFLSKTYDL VSEPQLDGVI SWGPAGNSFV VWNPSTFARD  120
VLPHNFKHNN FSSFVRQLNT YGFRKVHADR WEFAHEGFLR GSKHLLKTIV RRRSSPTQQS  180
SLQPGSSVFR KIQSGSSGES TLDPELSSLR REKNALLQEV ARLKEEHNQT IEHMNALNQR  240
LETAEDRQKQ VVSFLAKLLR NPDFLRQLKM HTERRDGIDS ARVKRKFLKH VPHGSRDSGD  300
SSSPRTGEST CSPAHPIAHD AIADLQSFLL EDTDLSEGML PGNFGLDGVE ASEDIGALVQ  360
VFDQQDLGTG AELLGVPPVS GAAHCQDPTI GRSKGKNVTR LGGTDGTSSQ ADCLVSLPGN  420
VGGEQIWGDD AFFQSSCSGT SQQAYVSDPY LMEIANKTGR FWELDFEGLD DGDLHLDKCV  480
IGDPALQQHR GNMKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-268017517123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_69675.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4460280.0HM446028.1 Hordeum vulgare subsp. vulgare heat shock factor A3 (HsfA3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146599.10.0heat stress transcription factor A-3-like
SwissprotQ6H6Q70.0HSFA3_ORYSJ; Heat stress transcription factor A-3
TrEMBLA0A1D5UWJ00.0A0A1D5UWJ0_WHEAT; Uncharacterized protein
STRINGMLOC_69675.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90103041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.17e-71heat shock transcription factor A3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]