PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_6901.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 394aa MW: 42422.1 Da PI: 6.3678

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6901.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.1	1.3e-17	11	139	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkd 89 +G+ F P d +l++ yL++k++g++l+++ + i+++d+y +eP L + + ++e +ewy F++ + +++++ r+ ra++ g+W++ MLOC_6901.1 11 RGLNFAPGDADLITIYLHRKISGSPLPAAAAwyIHDADVYAAEPAALVTgllpasaRDDGEGREWYIFTSVRAQSSRDVRRCRAVAggVGTWHSEKAR 108 79*********************88766557**********7446766543344677****************77734677*** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 vl+ +g+l g ++ +++ p k W+m e++ MLOC_6901.1 109 CGVLDGGGALLGYRQPFTYE----P---KNGWLMLEFS 139 *9**********96....3...4689999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-23	7	158	IPR003441	NAC domain
PROSITE profile	PS51005	19.632	9	158	IPR003441	NAC domain
Pfam	PF02365	5.3E-11	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MASPRTPDCA RGLNFAPGDA DLITIYLHRK ISGSPLPAAA AWYIHDADVY AAEPAALVTG 60 LLPASARDDG EGREWYIFTS VRAQSSRDVR RCRAVAGGVG TWHSEKARCG VLDGGGALLG 120 YRQPFTYEPK NGWLMLEFSQ EDARRGEPMP VVCKIYQKRR AGRSASKPIS SGSSSMSGST 180 SKRKAAAADE RSGEGSSARV RRCLQFRLLP AAPNPPTLAA TWEIPVDRPQ AEQEPGDQQE 240 PLARIAPRAT PLISSSSMTA DHALTFDRTT FLHSAQDWPT PANSDLSEAP LGNYKLVSTA 300 TSELTCYNAT TPLSDNTGAW AFQQSPLTTS YGTTSLLPGQ DWATPESSQV SEASTVESYS 360 YFSPDQATSR PTTQPISKSW SFEQCSELSA IFGA

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MASPRTPDCA RGLNFAPGDA DLITIYLHRK ISGSPLPAAA AWYIHDADVY AAEPAALVTG  60
LLPASARDDG EGREWYIFTS VRAQSSRDVR RCRAVAGGVG TWHSEKARCG VLDGGGALLG  120
YRQPFTYEPK NGWLMLEFSQ EDARRGEPMP VVCKIYQKRR AGRSASKPIS SGSSSMSGST  180
SKRKAAAADE RSGEGSSARV RRCLQFRLLP AAPNPPTLAA TWEIPVDRPQ AEQEPGDQQE  240
PLARIAPRAT PLISSSSMTA DHALTFDRTT FLHSAQDWPT PANSDLSEAP LGNYKLVSTA  300
TSELTCYNAT TPLSDNTGAW AFQQSPLTTS YGTTSLLPGQ DWATPESSQV SEASTVESYS  360
YFSPDQATSR PTTQPISKSW SFEQCSELSA IFGA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6901.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373690	0.0	AK373690.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3040D07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155864.1	1e-108	uncharacterized protein LOC109741202
TrEMBL	A0A287EU89	0.0	A0A287EU89_HORVV; Uncharacterized protein
STRING	MLOC_6901.1	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62380.1	2e-10	NAC-domain protein 101