PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68487.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | SRS | ||||||||
Protein Properties | Length: 80aa MW: 8447.42 Da PI: 6.227 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 84.2 | 3.3e-26 | 4 | 57 | 101 | 154 |
DUF702 101 etsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++P+evsseavfrcvr++ vd++e+elaYqt+vsigGhvfkGiL+d G+++ MLOC_68487.2 4 VAERFPREVSSEAVFRCVRLGPVDQAEAELAYQTTVSIGGHVFKGILHDVGPSS 57 5688***********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 5.2E-23 | 5 | 56 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 2.0E-24 | 7 | 55 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MVTVAERFPR EVSSEAVFRC VRLGPVDQAE AELAYQTTVS IGGHVFKGIL HDVGPSSNAH 60 AQLQAAAGGS GSDYQFRLTG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Regulates anther dehiscence and floral development. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:20706774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68487.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241285 | 5e-63 | AK241285.1 Oryza sativa Japonica Group cDNA, clone: J065137A19, full insert sequence. | |||
GenBank | AP005314 | 5e-63 | AP005314.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0515E01. | |||
GenBank | AP005567 | 5e-63 | AP005567.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1254_E07. | |||
GenBank | AP014965 | 5e-63 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 5e-63 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020192267.1 | 4e-39 | protein SHI RELATED SEQUENCE 1-like | ||||
Swissprot | Q9FXH7 | 1e-17 | SRS7_ARATH; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | A0A1I9RHF0 | 2e-48 | A0A1I9RHF0_HORVU; SHI | ||||
TrEMBL | A0A1I9RHF6 | 2e-48 | A0A1I9RHF6_HORVU; SHI | ||||
TrEMBL | A0A1I9RHG0 | 2e-48 | A0A1I9RHG0_HORVU; SHI | ||||
TrEMBL | A0A1I9RHG5 | 2e-48 | A0A1I9RHG5_HORVU; SHI | ||||
TrEMBL | A0A1I9RHG8 | 2e-48 | A0A1I9RHG8_HORVU; SHI | ||||
TrEMBL | A0A287S092 | 2e-48 | A0A287S092_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287S098 | 6e-50 | A0A287S098_HORVV; Uncharacterized protein | ||||
STRING | MLOC_68487.1 | 3e-50 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 3e-19 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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