PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68293.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 373aa    MW: 40232.9 Da    PI: 8.0572
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68293.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49e-07111131425
                   ---SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                   ++C+ff++ G C yG++C++ H
  MLOC_68293.1 111 RPCKFFLA-GDCTYGEKCRYPH 131
                   79******.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0542853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342107134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6108132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4111131IPR000571Zinc finger, CCCH-type
SMARTSM003209.9E-7138177IPR001680WD40 repeat
SuperFamilySSF509781.22E-40138355IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.5E-38140357IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004004.0E-6142177IPR001680WD40 repeat
PROSITE profilePS5029420.435145347IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.318145186IPR001680WD40 repeat
PROSITE patternPS006780164178IPR019775WD40 repeat, conserved site
PRINTSPR003206.1E-8164178IPR020472G-protein beta WD-40 repeat
SMARTSM00320300180215IPR001680WD40 repeat
SMARTSM003204.9217254IPR001680WD40 repeat
SMARTSM003200.0034261298IPR001680WD40 repeat
PfamPF004000.0027265298IPR001680WD40 repeat
PROSITE profilePS5008211.611268307IPR001680WD40 repeat
PROSITE patternPS006780285299IPR019775WD40 repeat, conserved site
PRINTSPR003206.1E-8285299IPR020472G-protein beta WD-40 repeat
SMARTSM003203.7E-4301338IPR001680WD40 repeat
PfamPF004000.016303337IPR001680WD40 repeat
PRINTSPR003206.1E-8325339IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGGY NKWGRGPGGA DGGVRHKVPD RPCKFFLAGD  120
CTYGEKCRYP HTYCMSNSIT LLTPLQGHEK VVTGIALPAG SDKLYSGSKD GTVRLWDCQT  180
GQCAGVLPVG GEVGCMISEG PWVFVGIPDA VKVWNMQTQA EMNLTGPTGQ VYALAVGNEL  240
LFAATQDGRI LAWRFSAVTN CFEPAASLTG HQLAVVSLIV GGMRLYSGSM DKTIRVWDLA  300
TLQCIQTLSD HTNVVMSLLC WDQFLLSCSL DQTIKVWAAT ESGNLEVTYT HKEENVHCKE  360
LLVLLFVMAR GNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221423378322Tako8
6g6n_A4e-221423378322Tako8
6g6n_B4e-221423378322Tako8
6g6n_C4e-221423378322Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188GGRGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68293.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627330.0AK362733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162465.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLF2DFR60.0F2DFR6_HORVV; Predicted protein
STRINGMLOC_68293.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-144C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]