PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68189.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | MYB_related | ||||||||
Protein Properties | Length: 283aa MW: 31223.3 Da PI: 9.2556 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 35 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky MLOC_68189.3 35 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 79 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-17 | 29 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 30 | 84 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-18 | 33 | 82 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.9E-7 | 33 | 85 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 34 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-11 | 35 | 79 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-8 | 37 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MVSTNPPPPP ALSDAAAGDD ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLFDRDWKKI 60 EAFVGSKTVI QIRSHAQKYF LKVQKNGTSE HVPPPRPKRK AAHPYPQKAS KNEPGYALKT 120 DPSAMLRNSG MNVAVSSWTH NSIPPVVASS FMKEDLGAGS MGPNIFCSSS SEGPPRAWQS 180 GETNDQINQV PSLRIMPDFA QVYSFLGSVF DPNTKGHLQK LKEMNPIDVE TALLLMRNLS 240 INLTSPDFED QRKLLSSYNS TSDGLELGSS RSSLLTDSAL SLF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68189.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354834 | 0.0 | AK354834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011N06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182046.1 | 0.0 | protein REVEILLE 6-like isoform X3 | ||||
Swissprot | Q8H0W3 | 1e-101 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A287EAJ9 | 0.0 | A0A287EAJ9_HORVV; Uncharacterized protein | ||||
TrEMBL | F2CT82 | 0.0 | F2CT82_HORVV; Predicted protein | ||||
STRING | MLOC_68189.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 4e-89 | MYB_related family protein |
Publications ? help Back to Top | |||
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