PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_68185.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 313aa    MW: 34545.1 Da    PI: 9.8259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_68185.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.92.6e-55261561128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtdeel+++yL+ k+++  +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++   
  MLOC_68185.2  26 LPPGFRFHPTDEELITYYLRGKIADAGFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFTGqp 121
                   79*************************999.89***************99999****************************************9888 PP

           NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +elvg+kktLvfykgrap+gek++Wvmheyrl
  MLOC_68185.2 122 psAQELVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 156
                   877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-6422177IPR003441NAC domain
PROSITE profilePS5100560.14326177IPR003441NAC domain
PfamPF023658.2E-2927156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGSGGGAEA ASKKKKSSKE GEEESLPPGF RFHPTDEELI TYYLRGKIAD AGFTARAITE  60
VDLNKCEPWD LPEKAKMGEK EWYFFSLRDR KYPTGVRTNR ATNAGYWKTT GKDKEIFTGQ  120
PPSAQELVGM KKTLVFYKGR APRGEKSNWV MHEYRLHLKP TSKSNKDEWV VCRIFAKSPG  180
VKKYPSSTSR SHHHHHPYTL DMVPQFLPTL LGHGDLFGGR GHHHSYMAPA DLAELSRFAR  240
GTPGLHPHIQ PHPSSVSGSG YLNPFALSSL NLNLGGPSPQ HALQHAMSLP MGGQQQAGGA  300
GGQAMTMEQH MAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-552518316171NO APICAL MERISTEM PROTEIN
1ut4_B2e-552518316171NO APICAL MERISTEM PROTEIN
1ut7_A2e-552518316171NO APICAL MERISTEM PROTEIN
1ut7_B2e-552518316171NO APICAL MERISTEM PROTEIN
3swm_A3e-552518319174NAC domain-containing protein 19
3swm_B3e-552518319174NAC domain-containing protein 19
3swm_C3e-552518319174NAC domain-containing protein 19
3swm_D3e-552518319174NAC domain-containing protein 19
3swp_A3e-552518319174NAC domain-containing protein 19
3swp_B3e-552518319174NAC domain-containing protein 19
3swp_C3e-552518319174NAC domain-containing protein 19
3swp_D3e-552518319174NAC domain-containing protein 19
4dul_A2e-552518316171NAC domain-containing protein 19
4dul_B2e-552518316171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_68185.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186546.10.0NAC domain-containing protein 92-like
SwissprotQ9FLR33e-80NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A287RTT30.0A0A287RTT3_HORVV; Uncharacterized protein
STRINGMLOC_68185.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.22e-87NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]