PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 22452.5 Da PI: 10.1787 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.7 | 7.7e-56 | 26 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lppGfrFhPtdeel+++yL+ k+++ +++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+++ MLOC_68185.1 26 LPPGFRFHPTDEELITYYLRGKIADAGFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFTGqp 121 79*************************999.89***************99999****************************************9888 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +elvg+kktLvfykgrap+gek++Wvmheyrl MLOC_68185.1 122 psAQELVGMKKTLVFYKGRAPRGEKSNWVMHEYRL 156 877888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.24E-60 | 22 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.813 | 26 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-29 | 27 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MEGSGGGAEA ASKKKKSSKE GEEESLPPGF RFHPTDEELI TYYLRGKIAD AGFTARAITE 60 VDLNKCEPWD LPEKAKMGEK EWYFFSLRDR KYPTGVRTNR ATNAGYWKTT GKDKEIFTGQ 120 PPSAQELVGM KKTLVFYKGR APRGEKSNWV MHEYRLHLKP TSKSNKVLQN MSSFIYGFVH 180 QSFQKAGDHP PFRKKFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-51 | 25 | 164 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-51 | 25 | 164 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-51 | 25 | 164 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-51 | 25 | 164 | 16 | 149 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swm_B | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swm_C | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swm_D | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swp_A | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swp_B | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swp_C | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
3swp_D | 9e-51 | 25 | 164 | 19 | 152 | NAC domain-containing protein 19 |
4dul_A | 9e-51 | 25 | 164 | 16 | 149 | NAC domain-containing protein 19 |
4dul_B | 9e-51 | 25 | 164 | 16 | 149 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68185.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186546.1 | 1e-108 | NAC domain-containing protein 92-like | ||||
Swissprot | O04017 | 3e-73 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | M0YDK7 | 1e-144 | M0YDK7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_68185.2 | 1e-118 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 7e-79 | NAC domain containing protein 38 |