PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_68061.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 114aa MW: 12378.8 Da PI: 9.0228 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 82.3 | 4.9e-26 | 22 | 80 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 Dg++WrKYGqK+++gs++pr YYrC+++ gC ++++v+r++e+p +++i Y geH++ MLOC_68061.2 22 ADGFAWRKYGQKDINGSNHPRLYYRCAFRgeGCAATRRVQRAQEEPAAFVIAYYGEHTC 80 6***************************9999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 12 | 81 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.54 | 16 | 83 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.49E-24 | 17 | 81 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-32 | 21 | 82 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-25 | 23 | 80 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 114 aa Download sequence Send to blast |
MPCKRRVRGA EAHREVHAGT TADGFAWRKY GQKDINGSNH PRLYYRCAFR GEGCAATRRV 60 QRAQEEPAAF VIAYYGEHTC GAAVCRQSAE PLPPSVVDSG SNARGIVGAT AIDQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-17 | 23 | 80 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_68061.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 4e-74 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186011.1 | 2e-65 | probable WRKY transcription factor 38 | ||||
TrEMBL | A0A287LWL3 | 3e-77 | A0A287LWL3_HORVV; Uncharacterized protein | ||||
STRING | EMT25163 | 9e-65 | (Aegilops tauschii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 8e-20 | WRKY DNA-binding protein 30 |