PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67940.1
Common NameSLN1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 445aa    MW: 47308.4 Da    PI: 5.7639
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67940.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS463.81e-141574411374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfs 94 
                   lv++Ll+cAeav++++l++a+al++++  la+++g +m+++aayf eALa+r++r        ++p+++s  +  ++++a+ l   f+e +P+lkf+
  MLOC_67940.1  57 LVHALLACAEAVQQENLSAAEALVKQIPLLAASQGGAMRKVAAYFGEALARRVFR--------FRPQPDS--SLLDAAFADLLhahFYESCPYLKFA 143
                   689****************************************************........5555555..34444444444456*********** PP

          GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                   h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+
  MLOC_67940.1 144 HFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEP 240
                   ************************************************************************************************* PP

          GRAS 192 eeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak....... 274
                    +L+ +         E++aVn+v+++hrll+++++le+    vL +v+ ++P++v+vveqea+hns+sFl+rf+e+l+yys++fdsle +       
  MLOC_67940.1 241 FMLQPEGeedpneePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGGssggpse 333
                   ***544444557789***********************....*********************************************98889***** PP

          GRAS 275 ......lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                         +p+++  +++++++++lgr+i+nvvaceg+er+erhetl++Wr+rl++aGF++v+l+++a+kqa++ll+ ++ +dgy+vee++g+l+lgW+
  MLOC_67940.1 334 vssggaAPAAAaGTDQVMSEVYLGRQICNVVACEGTERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAgGDGYKVEEKEGCLTLGWH 430
                   *****86655569************************************************************************************ PP

          GRAS 364 drpLvsvSaWr 374
                   +rpL+++SaWr
  MLOC_67940.1 431 TRPLIATSAWR 441
                   **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.17931420IPR005202Transcription factor GRAS
PfamPF035143.5E-13957441IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRTGGSSTSS SSSSSSSLGG GAARSSVVEA APPVAAAAAA PALPVVVVDT QEAGIRLVHA  60
LLACAEAVQQ ENLSAAEALV KQIPLLAASQ GGAMRKVAAY FGEALARRVF RFRPQPDSSL  120
LDAAFADLLH AHFYESCPYL KFAHFTANQA ILEAFAGCRR VHVVDFGIKQ GMQWPALLQA  180
LALRPGGPPS FRLTGVGPPQ PDETDALQQV GWKLAQFAHT IRVDFQYRGL VAATLADLEP  240
FMLQPEGEED PNEEPEVIAV NSVFEMHRLL AQPGALEKVL GTVRAVRPRI VTVVEQEANH  300
NSGSFLDRFT ESLHYYSTMF DSLEGGSSGG PSEVSSGGAA PAAAAGTDQV MSEVYLGRQI  360
CNVVACEGTE RTERHETLGQ WRNRLGNAGF ETVHLGSNAY KQASTLLALF AGGDGYKVEE  420
KEGCLTLGWH TRPLIATSAW RLAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-646444026378Protein SCARECROW
5b3h_A4e-646444025377Protein SCARECROW
5b3h_D4e-646444025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a negative regulator of GAMYB gene expression. {ECO:0000269|PubMed:12011349, ECO:0000269|PubMed:12011350, ECO:0000269|PubMed:12468736}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4602190.0AF460219.1 Hordeum vulgare subsp. vulgare nuclear transcription factor SLN1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560731.10.0DELLA protein SLN1
SwissprotQ8W1270.0SLN1_HORVU; DELLA protein SLN1
TrEMBLF2E7E00.0F2E7E0_HORVV; Predicted protein
STRINGMLOC_67940.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-180GRAS family protein
Publications ? help Back to Top
  1. Chandler PM,Marion-Poll A,Ellis M,Gubler F
    Mutants at the Slender1 locus of barley cv Himalaya. Molecular and physiological characterization.
    Plant Physiol., 2002. 129(1): p. 181-90
    [PMID:12011349]
  2. Gubler F,Chandler PM,White RG,Llewellyn DJ,Jacobsen JV
    Gibberellin signaling in barley aleurone cells. Control of SLN1 and GAMYB expression.
    Plant Physiol., 2002. 129(1): p. 191-200
    [PMID:12011350]
  3. Fu X, et al.
    Gibberellin-mediated proteasome-dependent degradation of the barley DELLA protein SLN1 repressor.
    Plant Cell, 2002. 14(12): p. 3191-200
    [PMID:12468736]