PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67886.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 365aa    MW: 40422.4 Da    PI: 9.1492
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67886.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.31.6e-141162001399
                   TT-EE--HHH.HTT.---..--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3  13 sgrlvlpkkfaeeh.ggkkeesktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   s+rl+lp kf++   +g   ++k+++l+   +g r W vk+  +   g+++l++GW++F++a++L+ g f+vF++dg  ++ l+vkvf+ 
  MLOC_67886.1 116 SSRLRLPDKFTRVLlDGF--KPKEVKLREaGHGrRFWGVKVVLDAD-GHMYLGRGWEQFARAHDLRLGYFLVFSYDG--DAVLTVKVFDV 200
                   579********7768444..4567888875555689*****65555.5778***********************988..55569999985 PP
2B346.75.6e-15264345888
                   -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
            B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                     v +++ l +p +f ++hg+ ++++++l++   +g+sW+v+l++   ++++ r  l+ GW +F+ +ngL +gD++ F+  g+  
  MLOC_67886.1 264 LGVRQKQYLNVPADFQNAHGYGERTKVELRM---RGKSWSVNLKHsprNRGRPRASLRYGWHQFCVDNGLGVGDTCFFRALGDgG 345
                   5567778899*********999777666664...67*******998765555569************************777634 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.338104201IPR003340B3 DNA binding domain
CDDcd100177.24E-19105199No hitNo description
SMARTSM010191.1E-13108201IPR003340B3 DNA binding domain
SuperFamilySSF1019361.08E-17114203IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-17114203IPR015300DNA-binding pseudobarrel domain
PfamPF023623.8E-12116199IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-23251360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-16251344IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-7254360IPR003340B3 DNA binding domain
CDDcd100173.71E-12255358No hitNo description
PROSITE profilePS5086312.097257360IPR003340B3 DNA binding domain
PfamPF023622.6E-12266344IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MRLSLSFFYK LVRPTPRFAH PRPEHQQAKN GTWYSDNCAV PFFLPQAGSS YTPLCSHSAR  60
TPSSSPPSLA GCRCQEGVRS PPPAAPYDAA STRQETREMD GLEGFEFFEI ILENPSSRLR  120
LPDKFTRVLL DGFKPKEVKL REAGHGRRFW GVKVVLDADG HMYLGRGWEQ FARAHDLRLG  180
YFLVFSYDGD AVLTVKVFDV SMCRRHYQHD GDASSGSSSD GDSGSNNGSV GDSGGGNISG  240
MVATMGIDDG PTSQFTVMLR ESNLGVRQKQ YLNVPADFQN AHGYGERTKV ELRMRGKSWS  300
VNLKHSPRNR GRPRASLRYG WHQFCVDNGL GVGDTCFFRA LGDGGAGDTH LLKVEVRKRD  360
GGYVV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67886.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3769980.0AK376998.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145A16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148430.11e-146B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-78Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLM0YCH80.0M0YCH8_HORVV; Uncharacterized protein
STRINGMLOC_67886.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.13e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]