PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67834.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 391aa    MW: 42066.9 Da    PI: 7.179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67834.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.8e-13319364655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  MLOC_67834.1 319 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 364
                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326313363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16316373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.44E-14317368No hitNo description
Gene3DG3DSA:4.10.280.104.0E-15318375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-10319364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MYGSPASPDL NQPPPPMNSS GLLRYRSAPS TLLGEVCEEF LQPGPRAASP DAAAAAAADN  60
VFSRFLADHQ IRDTKPPPPP PVAHFPDDAA AMASQHHHHQ QQQMMFHSHQ QQQQQQMPPV  120
GVEGLYRTVS SAGMDSAAAA NGIGNDSLLR QSSSPAGFLN HLNMDNGYES MLRQGMGVGF  180
RNGATNAAAA VDSSGSGGGR LKGQLSFSSR QGSLMSQISE MGSEDLGGSS PEGAGGSRGY  240
IPGYPMSSGW EESSLMSENM SGMKRPRDSS EPAQNGLAHQ FSLPKTSSEM AAIEKFLQFQ  300
DAVPCKIRAK RGCATHPRSI AERVRRTRIS ERIRKLQELV PNMDKQTNTA DMLDLAVDYI  360
KELQEQVKVI NESRASCTCS ASKQHHQQYS G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174831.10.0transcription factor bHLH130-like
TrEMBLF2CSN20.0F2CSN2_HORVV; Predicted protein
STRINGMLOC_67834.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-48bHLH family protein