PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67781.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YA
Protein Properties Length: 297aa    MW: 32458.5 Da    PI: 10.0107
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67781.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.3e-32145201158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +ep++VNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  MLOC_67781.5 145 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGTGGRF 201
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-37143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.001144204IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.4E-27146201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.5E-24147169IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860149169IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.5E-24178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEDHPISNYD FLSGNGCHSK KLVDKNYDQD SSSTKSDRSQ QEAPAMTDSS LNEQHVSRPS  60
SQSDNDNDHG KPDQHMIKSL LSLGNPDTVA PPPMLACSQS FAYIPYPADA YAGVFPGYAS  120
HAIVHPQLNA ATNSRVPLPV EPAAEEPMFV NAKQYHAILR RRQIRAKLEA QNKLVKARKP  180
YLHESRHRHA MKRARGTGGR FLNTKQLEEQ KQKQASGGAS CTKVLGKNTV LQSSPTFAPL  240
ASAPSNMSSF STTGMLANQE RACFPSLGFR PTVSFAALNG NGKLAPNGMH QRASMMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-23145206263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185194RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67781.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517790.0AK251779.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf130j12, mRNA sequence.
GenBankAK3705700.0AK370570.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159951.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020159952.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020159953.10.0nuclear transcription factor Y subunit A-7-like
TrEMBLF2E3470.0F2E347_HORVV; Predicted protein
STRINGMLOC_67781.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-35nuclear factor Y, subunit A5