PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67781.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NF-YA | ||||||||
Protein Properties | Length: 300aa MW: 32749.8 Da PI: 10.0107 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.4 | 4.4e-32 | 148 | 204 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+Rg+gGrF MLOC_67781.4 148 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGTGGRF 204 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-37 | 146 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.001 | 147 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.5E-27 | 149 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.5E-24 | 150 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 152 | 172 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.5E-24 | 181 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MEDHPGHPIS NYDFLSGNGC HSKKLVDKNY DQDSSSTKSD RSQQEAPAMT DSSLNEQHVS 60 RPSSQSDNDN DHGKPDQHMI KSLLSLGNPD TVAPPPMLAC SQSFAYIPYP ADAYAGVFPG 120 YASHAIVHPQ LNAATNSRVP LPVEPAAEEP MFVNAKQYHA ILRRRQIRAK LEAQNKLVKA 180 RKPYLHESRH RHAMKRARGT GGRFLNTKQL EEQKQKQASG GASCTKVLGK NTVLQSSPTF 240 APLASAPSNM SSFSTTGMLA NQERACFPSL GFRPTVSFAA LNGNGKLAPN GMHQRASMMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-23 | 148 | 209 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 188 | 197 | RHRHAMKRAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67781.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251779 | 0.0 | AK251779.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf130j12, mRNA sequence. | |||
GenBank | AK370570 | 0.0 | AK370570.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112K12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159951.1 | 0.0 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_020159952.1 | 0.0 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_020159953.1 | 0.0 | nuclear transcription factor Y subunit A-7-like | ||||
TrEMBL | M0YC53 | 0.0 | M0YC53_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67781.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-35 | nuclear factor Y, subunit A5 |