PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67781.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NF-YA | ||||||||
Protein Properties | Length: 244aa MW: 26578.5 Da PI: 10.6814 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.8 | 3.1e-32 | 92 | 148 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+Rg+gGrF MLOC_67781.3 92 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGTGGRF 148 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-37 | 90 | 151 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.001 | 91 | 151 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.2E-27 | 93 | 148 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.1E-24 | 94 | 116 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 96 | 116 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.1E-24 | 125 | 148 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009785 | Biological Process | blue light signaling pathway | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MLTVTLLFVS DNDNDHGKPD QHMIKSLLSL GNPDTVAPPP MLACSQSFAY IPYPADAYAG 60 VFPGYASHAI VHPQLNAATN SRVPLPVEPA AEEPMFVNAK QYHAILRRRQ IRAKLEAQNK 120 LVKARKPYLH ESRHRHAMKR ARGTGGRFLN TKQLEEQKQK QASGGASCTK VLGKNTVLQS 180 SPTFAPLASA PSNMSSFSTT GMLANQERAC FPSLGFRPTV SFAALNGNGK LAPNGMHQRA 240 SMMR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-23 | 92 | 153 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 141 | RHRHAMKRAR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67781.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251779 | 0.0 | AK251779.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf130j12, mRNA sequence. | |||
GenBank | AK370570 | 0.0 | AK370570.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112K12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159951.1 | 1e-159 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_020159952.1 | 1e-159 | nuclear transcription factor Y subunit A-7-like | ||||
Refseq | XP_020159953.1 | 1e-159 | nuclear transcription factor Y subunit A-7-like | ||||
Swissprot | Q9SYH4 | 1e-39 | NFYA5_ARATH; Nuclear transcription factor Y subunit A-5 | ||||
TrEMBL | M0YC55 | 0.0 | M0YC55_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67781.1 | 1e-174 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 2e-35 | nuclear factor Y, subunit A5 |