PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67781.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NF-YA
Protein Properties Length: 289aa    MW: 31502.5 Da    PI: 10.245
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67781.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.44.1e-32137193158
     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   +ep++VNaKQy++Il+RRq Rakle+++kl  k+rkpylheSRh+hA++R+Rg+gGrF
  MLOC_67781.2 137 EEPMFVNAKQYHAILRRRQIRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGTGGRF 193
                   69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-37135196IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.001136196IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-27138193IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24139161IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860141161IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-24170193IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009785Biological Processblue light signaling pathway
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDFLSGNGCH SKKLVDKNYD QDSSSTKSDR SQQEAPAMTD SSLNEQHVSR PSSQSDNDND  60
HGKPDQHMIK SLLSLGNPDT VAPPPMLACS QSFAYIPYPA DAYAGVFPGY ASHAIVHPQL  120
NAATNSRVPL PVEPAAEEPM FVNAKQYHAI LRRRQIRAKL EAQNKLVKAR KPYLHESRHR  180
HAMKRARGTG GRFLNTKQLE EQKQKQASGG ASCTKVLGKN TVLQSSPTFA PLASAPSNMS  240
SFSTTGMLAN QERACFPSLG FRPTVSFAAL NGNGKLAPNG MHQRASMMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-23137198263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177186RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67781.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2517790.0AK251779.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf130j12, mRNA sequence.
GenBankAK3705700.0AK370570.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159951.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020159952.10.0nuclear transcription factor Y subunit A-7-like
RefseqXP_020159953.10.0nuclear transcription factor Y subunit A-7-like
TrEMBLM0YC530.0M0YC53_HORVV; Uncharacterized protein
STRINGMLOC_67781.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.17e-36nuclear factor Y, subunit A5