PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MLOC_67296.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 237aa MW: 25627 Da PI: 10.5828 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96 | 5.8e-30 | 19 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk.atgkdkevls 94 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi++v ++++++Pwd+ a+e e y+F+ r + a +r r t+sg Wk a+ ++++v++ MLOC_67296.1 19 LPPGFRFRPTDEELVVQYLRRKALGLPLPA-AVISDVhNLHSLDPWDIS---GAREGEKYYFAVRPAAGA--RRGGRtPTASGCWKpASARERPVVV 109 79****************************.89999999*********7...345678899999988765..466665688*****77778999999 PP NAM 95 k...kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128 + +++lvg+kk+++f ++ p +t Wvmheyrl MLOC_67296.1 110 SrcgRNHLVGVKKSMAFVprrakgnkgSKAPPALAQTGWVMHEYRL 155 88888899**********886655532233444559********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-37 | 17 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.131 | 19 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-20 | 20 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MERTPVMVRQ GGQEVLRQLP PGFRFRPTDE ELVVQYLRRK ALGLPLPAAV ISDVHNLHSL 60 DPWDISGARE GEKYYFAVRP AAGARRGGRT PTASGCWKPA SARERPVVVS RCGRNHLVGV 120 KKSMAFVPRR AKGNKGSKAP PALAQTGWVM HEYRLALPHH HKNGCCLGEA GTEEWVVCRI 180 FQRHRSSSSS KGQTPGIHGT DGHRTMPPSP SSSASSSSSS CVTGGGSSSD LQEEVSS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-25 | 19 | 187 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-25 | 19 | 187 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-25 | 19 | 187 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-25 | 19 | 187 | 17 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swm_B | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swm_C | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swm_D | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swp_A | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swp_B | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swp_C | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
3swp_D | 9e-26 | 19 | 187 | 20 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-25 | 19 | 187 | 17 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-25 | 19 | 187 | 17 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | MLOC_67296.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151744.1 | 1e-140 | NAC domain-containing protein 83-like | ||||
TrEMBL | G2ZH17 | 1e-173 | G2ZH17_HORVV; NAC transcription factor | ||||
STRING | MLOC_67296.1 | 1e-174 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-32 | NAC domain containing protein 83 |