PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_67250.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 272aa    MW: 30859.7 Da    PI: 10.1193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_67250.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.96.7e-52161591128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvkaeekewyfFskrdkkyatgkrknratksg 81 
                   +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++                + +++++ewyfFs +d+ky+tg+r+nrat++g
  MLOC_67250.4  16 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQAercgggrggrgarqapEDDQTSSEWYFFSFKDRKYPTGTRTNRATAAG 111
                   69****************************.99**************9558999999988775442223445************************* PP

           NAM  82 yWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +Wkatg+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  MLOC_67250.4 112 FWKATGRDKPVTSSrSRGVIGMRKTLVFYTGRAPNGRKTDWIIHEYRL 159
                   ************9856678***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.76E-528169IPR003441NAC domain
PROSITE profilePS5100551.41116187IPR003441NAC domain
PfamPF023653.8E-2717159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLAMEQQHHE QEESCVPPGF RFHPTEEELV GYYLARKVAA QKIDLDIIQE VDLYRIEPWD  60
LQAERCGGGR GGRGARQAPE DDQTSSEWYF FSFKDRKYPT GTRTNRATAA GFWKATGRDK  120
PVTSSRSRGV IGMRKTLVFY TGRAPNGRKT DWIIHEYRLQ TNEHAPTQVP NSSLLHPPSP  180
SCREFVVDDH DHGYDVAGGR LGGVPCVPEA NPEPETVLHL PRIRRRPGSR RLLRHAAVAA  240
ARPSRRPPFP AERQRGYGSR RPRFPRPGHP VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4721851166Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_67250.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184125.12e-96NAC domain-containing protein 30-like
SwissprotQ9SL413e-68NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A287JTN81e-149A0A287JTN8_HORVV; Uncharacterized protein
STRINGMLOC_67250.11e-106(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.14e-58vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]