PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67201.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

GRF

Protein Properties

Length: 588aa MW: 62570.6 Da PI: 7.5397

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67201.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.1e-24	191	234	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e MLOC_67201.1 191 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 234 69***************************************986 PP
2	QLQ	65.6	1.2e-22	124	160	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan PvP++Ll++i++ MLOC_67201.1 124 GPFTPSQWMELEHQALIYKYLAANIPVPHNLLVPIRR 160 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	5.1E-14	124	160	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.7E-16	125	159	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.377	125	160	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	190	234	IPR014977	WRC domain
Pfam	PF08879	4.9E-20	192	233	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MLGSRLLKHG RANAAAEADE HGWGLGVRPA AKQARAAASA GDSDAVSEAV RAAAPYLLGT 60 CSPGHGREKM LSFSSSHSQP PSCPSAAAAQ AALPLYYGTP ASCSGLSSVS LSASIQGAMA 120 RVRGPFTPSQ WMELEHQALI YKYLAANIPV PHNLLVPIRR SVTSLYPSAY FGSSTLGWGP 180 FQLGYSGNAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEGQPGHAA 240 KAMPATVAAA AQPGALAAGG CGGATAGAAI GHEQQPMKSY AANAIDPCSL QYNSREMVSK 300 QQQECEQVQD SDSLSMLTSM SARNTAGSMF PFSKEHHNHN HNHNHNPFEV TSSRPDYGLV 360 SSDSLMTSSP HSSLENVNLL TSQRALSNEQ QSSLSLQHFA DWPRTPSQQG HGGALSWPDA 420 EDMQQAHQRT QLSISAPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LSIAATAAAK 480 EDEGEANWMP LFRDSAMGGP LGEALNKNNG GNMEAKNYLS ASLNLMTDAW DSSPLESSPV 540 GVLQRTAFGS VSSSTGSSPR QEYHGVYDGV PRDDLGSIVV NHPSIRLM

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MLGSRLLKHG RANAAAEADE HGWGLGVRPA AKQARAAASA GDSDAVSEAV RAAAPYLLGT  60
CSPGHGREKM LSFSSSHSQP PSCPSAAAAQ AALPLYYGTP ASCSGLSSVS LSASIQGAMA  120
RVRGPFTPSQ WMELEHQALI YKYLAANIPV PHNLLVPIRR SVTSLYPSAY FGSSTLGWGP  180
FQLGYSGNAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK HVEGQPGHAA  240
KAMPATVAAA AQPGALAAGG CGGATAGAAI GHEQQPMKSY AANAIDPCSL QYNSREMVSK  300
QQQECEQVQD SDSLSMLTSM SARNTAGSMF PFSKEHHNHN HNHNHNPFEV TSSRPDYGLV  360
SSDSLMTSSP HSSLENVNLL TSQRALSNEQ QSSLSLQHFA DWPRTPSQQG HGGALSWPDA  420
EDMQQAHQRT QLSISAPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LSIAATAAAK  480
EDEGEANWMP LFRDSAMGGP LGEALNKNNG GNMEAKNYLS ASLNLMTDAW DSSPLESSPV  540
GVLQRTAFGS VSSSTGSSPR QEYHGVYDGV PRDDLGSIVV NHPSIRLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67201.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	0.0	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A287N5R0	0.0	A0A287N5R0_HORVV; Uncharacterized protein
STRING	MLOC_67201.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-49	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]