PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_67081.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 299aa MW: 32415.8 Da PI: 9.1575

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_67081.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.6	1.4e-28	21	73	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 pr++Wt eLH++F++a+e+LGG+ +AtPk++le+m+vk Lt++hvkSHLQ+YR MLOC_67081.1 21 PRMQWTAELHSSFLQAIESLGGEPNATPKRVLEAMGVKELTISHVKSHLQMYR 73 8**************************************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-26	17	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-14	19	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-23	21	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	22	73	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MWSSVKKQQE PVRRYVRSRV PRMQWTAELH SSFLQAIESL GGEPNATPKR VLEAMGVKEL 60 TISHVKSHLQ MYRGPSTRKD KKEAQPQPQP LQRRHSCAAD EQGCGGPKPF MCPPLKRART 120 TGTVAAHKGM QGSKGISETK TSGAANQYCI DDYMQAMAME RRIKEEGLSG WQRDAAPAAA 180 VSSLQTVGCL EQGSALAGDF KIIKPEARYC YPGLAVKKQD LKEEKPEKDS SGTEQCALSL 240 SLGTDPKCFR AVSSSSPSEG SCIISSSPPR RSSSHCSGHS GYLDAQGVNL ELSLSICGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-14	22	73	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	22	73	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	22	73	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	22	73	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	22	78	4	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_67081.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185290.1	1e-126	putative Myb family transcription factor At1g14600
TrEMBL	M0Y9Q3	0.0	M0Y9Q3_HORVV; Uncharacterized protein
STRING	MLOC_67081.2	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04580.1	2e-21	G2-like family protein