PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_67028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 14882 Da PI: 10.145 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H MLOC_67028.1 94 HQCHVCGLEFEMGQALGGHMRRH 116 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.7E-11 | 42 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.2E-7 | 42 | 116 | No hit | No description |
SMART | SM00355 | 0.51 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.3E-11 | 93 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.681 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MVSSMKQCRD QAEVPFVSLS LSLGAMADRI SKKQRRGADG EFVCKTCSRA FPSFQALGGH 60 RTSHLRGRHG LALGLAAGSD QPATKRTTDQ KQAHQCHVCG LEFEMGQALG GHMRRHREQE 120 APATTAQAPP VLLQLFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_67028.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU253554 | 1e-145 | EU253554.1 Triticum aestivum C2H2 zinc finger protein (ZFP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198422.1 | 7e-81 | zinc finger protein ZAT8-like | ||||
Refseq | XP_020199617.1 | 7e-81 | zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 8e-19 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A287SRZ3 | 2e-94 | A0A287SRZ3_HORVV; Uncharacterized protein | ||||
STRING | MLOC_67028.1 | 1e-95 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 5e-19 | C2H2 family protein |