PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66934.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Trihelix
Protein Properties Length: 441aa    MW: 49922.6 Da    PI: 6.5798
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66934.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.54.1e-24119214185
      trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 
                   +Wt ++v++Li+a ++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++++ + +++d +
  MLOC_66934.1 119 KWTGSMVKLLITAASYTGEDPGADLgggrrnitvmQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGTaCTVVDNPALLDCM 214
                   7*********************8744455667777*********************************************9548888887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-18117238No hitNo description
CDDcd146860.00555393431No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDRSNLPPGN PTQGTPYGSL NVHGNSMQMH APSSGKHLFN QSQMPGSFTM PINRATEHDN  60
PGSGFQFVEH GKKDHHQQQQ HNHLIKNSIS DGEEHDVTED TTDAQSGKGK KGSAWHRMKW  120
TGSMVKLLIT AASYTGEDPG ADLGGGRRNI TVMQKKGKWK AISKVMGERG CNVSPQQCED  180
KFNDLNKRYK RLTDILGRGT ACTVVDNPAL LDCMSNLSDK MKEDARKILN SKHLFYEMMC  240
SYHNNNRVNL PEDLALQHSL QVALRCKEEH DPRRDASGDA EEDEQSADSD YEDHDEEHQA  300
VHHSMRDPSM NKRMCHALDH GDAGFVTSSS NDGSGSLDPH GIALDINKAL LDGTNLSVLR  360
KELASQAIEL RKRRLQIEAQ ELEVTEQRLK WERFRRKKDR EIERMESENE DMLLENKRLE  420
LQLKHKELEV ELKLKGNPDH E
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3712000.0AK371200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2127P16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187300.10.0stress response protein NST1-like
TrEMBLM0Y9990.0M0Y999_HORVV; Uncharacterized protein
STRINGMLOC_66934.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-93sequence-specific DNA binding transcription factors