PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66439.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 547aa    MW: 59634.6 Da    PI: 8.6094
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66439.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.76.3e-2527128199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae++       + +   s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +++
  MLOC_66439.1  27 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDG 119
                   99****************************9843.43.4569************************************************..34899 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   el+++v+r+
  MLOC_66439.1 120 ELRLGVRRA 128
                   99***9986 PP
2Auxin_resp110.51.7e-36153233182
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                   ++++++++svF+++YnPra++seF+v+++k++k+l++++++GmRfk+++ +ed++err sG+++g++++dp+rW++SkW+sL
  MLOC_66439.1 153 VVNSLKHRSVFHICYNPRAAASEFIVPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINEVDPIRWTGSKWKSL 233
                   67899*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-4411166IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-3923128IPR015300DNA-binding pseudobarrel domain
CDDcd100174.31E-2325127No hitNo description
PROSITE profilePS5086313.22527129IPR003340B3 DNA binding domain
SMARTSM010194.4E-2427129IPR003340B3 DNA binding domain
PfamPF023625.7E-2327128IPR003340B3 DNA binding domain
PfamPF065071.6E-29154233IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MGGGRFEGED DMEDVDGERK SRMLHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYQQ  60
IRPSQELVAK DLHGAKWRFR HIYRGQPRRH LLTTGWSSFV NKKKLVSGDA VLFLRGDDGE  120
LRLGVRRAIQ LKNEALLKAF NSNSSKIHTL SAVVNSLKHR SVFHICYNPR AAASEFIVPY  180
WKFLKSLNRP FCIGMRFKIQ YGSEDVNERR SGMITGINEV DPIRWTGSKW KSLLVRWEDG  240
IDCNNQNRLS PWEIEIVGGS VSIAQSLSAS SSKRTKLCPQ GNLDVPTLYG NGRPDSVGAD  300
KLPRVLQGQE LMGSGTHRVT CPPQPGGATE FRRSDGAGFL TDTRSCMLSG PASRLPPQSS  360
YFAYQPVGFG ESVRFPEVLQ GQEVCQTVPL FQGMVSDTCS TKGGYGLYNY MCTSSAMNGG  420
LSSAAQGYPL SLATPPPAEA ASPSQLCLAS KSNEEAGNGS QPNPLGIRKA PGDGAAKLGS  480
DGRKVARTSC MLFGFSLTEK MLPTEEDCAK EGSHEADCQN PRMLDLFGYN RATPSALHAL  540
CAAPLGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-7624255121353Auxin response factor 1
4ldy_B2e-7624255121353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3548060.0AK354806.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1011H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175130.10.0auxin response factor 3-like
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLM0Y7E00.0M0Y7E0_HORVV; Auxin response factor
STRINGMLOC_66439.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-117ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]