PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66345.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 127aa MW: 13805.6 Da PI: 10.1688 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 35.1 | 2.7e-11 | 101 | 122 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYGqK+vk+s +pr MLOC_66345.3 101 LDDGYKWRKYGQKVVKNSLHPR 122 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-13 | 86 | 123 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-10 | 93 | 123 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.058 | 96 | 127 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-4 | 101 | 127 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-7 | 102 | 123 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MFSSDHGGGL YPLLPGIPFC HSAASLEKPT GFAPLGGTGE AGTSAARAGN EIAATTTTTT 60 TASCHGPSSW WKGAEKGKMK VRRKMREPRF CFQTRSEVDV LDDGYKWRKY GQKVVKNSLH 120 PRYTHST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66345.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665432 | 1e-169 | EU665432.1 Triticum aestivum WRKY3 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155480.1 | 6e-73 | probable WRKY transcription factor 12 | ||||
Swissprot | Q93WY4 | 2e-28 | WRK12_ARATH; Probable WRKY transcription factor 12 | ||||
TrEMBL | A0A287IZ94 | 2e-89 | A0A287IZ94_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66345.1 | 5e-86 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44745.1 | 1e-29 | WRKY family protein |
Publications ? help Back to Top | |||
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