PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66260.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | YABBY | ||||||||
Protein Properties | Length: 70aa MW: 7357.48 Da PI: 8.2286 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 90.7 | 3.6e-28 | 8 | 64 | 5 | 60 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laae 60 +eqvCyv+CnfCnt+lavsvP +s+f+vvtvrCGhCt+llsv+l+ +++ l+a MLOC_66260.5 8 APAEQVCYVHCNFCNTVLAVSVPGNSMFNVVTVRCGHCTNLLSVSLRGQVHSpLPAA 64 5689******************************************98876425554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.0E-27 | 9 | 66 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 70 aa Download sequence Send to blast |
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMFNVVTV RCGHCTNLLS VSLRGQVHSP 60 LPAAAQAQVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66260.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK250112 | 1e-111 | AK250112.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf66k10, mRNA sequence. | |||
GenBank | AK376982 | 1e-111 | AK376982.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3144O03. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168301.1 | 3e-39 | protein YABBY 6-like, partial | ||||
Refseq | XP_020201583.1 | 1e-38 | protein YABBY 6-like | ||||
Swissprot | Q2QM17 | 3e-30 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | M0Y6S6 | 6e-43 | M0Y6S6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66260.1 | 1e-41 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-20 | YABBY family protein |