PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66252.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 266aa    MW: 28754.8 Da    PI: 6.0459
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66252.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353.1e-11141189452
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                    kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L  ++  l
  MLOC_66252.1 141 PKRVKRILANRQSAQRSRVRKLQYISELERCVTTLQNEVSVLSPRVAFL 189
                   5999**********************************88887666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.1E-14138202IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.53140192IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.43E-11142196No hitNo description
Gene3DG3DSA:1.20.5.1704.6E-13142196No hitNo description
PfamPF001701.7E-9142187IPR004827Basic-leucine zipper domain
CDDcd147035.79E-26143194No hitNo description
PROSITE patternPS000360145160IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAQLPPKIPM AAGAHHWPGA GAGVEHHGHG PAVVWADEFA EFAAARRGAH RRSLSDSVAF  60
VEMAPGGCGG AGDFDRLDDD QLMSMFPDEG GSTAPGSENG TSDSDGKERY DDGQNDDANP  120
EEPGGPGQAT PTSSTETIRD PKRVKRILAN RQSAQRSRVR KLQYISELER CVTTLQNEVS  180
VLSPRVAFLD QQRTILTVGN SHLKQRIAAL AQDKLFKDAH QEALKEEIER LRQVYQQQNL  240
RMSSGAGAAS DHGGPPPVRA EKELMS
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-165HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195077.11e-169basic leucine zipper 6-like
SwissprotQ5JMK61e-124BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLM0Y6Q90.0M0Y6Q9_HORVV; Uncharacterized protein
STRINGMLOC_66252.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-66bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]