PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66134.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 307aa    MW: 32743.3 Da    PI: 8.1574
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66134.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.65.9e-24110170158
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                   ldDg++WrKYGqKe+++s+++r+Y+rCt++    C ++++v+r+++d+ ++ +tY g H +
  MLOC_66134.1 110 LDDGHAWRKYGQKEIHNSKHSRAYFRCTHKydqLCAAQRQVQRCDDDEGMFRVTYIGVHPC 170
                   59***************************98878*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-2596173IPR003657WRKY domain
SuperFamilySSF1182903.01E-23104173IPR003657WRKY domain
PROSITE profilePS5081119.072105173IPR003657WRKY domain
SMARTSM007742.2E-33110172IPR003657WRKY domain
PfamPF031061.6E-21111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
METPFAQVTD DLIKGRELAT QLQGLLRDSP KSGLIMDRIL HAFSRSIHAA KAAVATSERA  60
SSDVQSEVID GVSGGGKRKP ASAAAGGNRR ACRRRTQQSS VVFTKSIKSL DDGHAWRKYG  120
QKEIHNSKHS RAYFRCTHKY DQLCAAQRQV QRCDDDEGMF RVTYIGVHPC RDPAAAVAPH  180
VLHLTGTAEG MHAGCRLISF APGGAAATTH DATASTTTNA NLVDKDAATG SGRQGMKPES  240
GDQEEVLSSR TPGNSAPRST APAATAPAWP DQGDVTSTRQ YGGAVSFGEY LDDYTSLGDL  300
ASYVLDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-33107171569OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66134.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6654401e-173EU665440.1 Triticum aestivum WRKY11 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148215.11e-150probable WRKY transcription factor 70
TrEMBLA0A287X4K40.0A0A287X4K4_HORVV; Uncharacterized protein
STRINGMLOC_66134.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-26WRKY DNA-binding protein 70