PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65945.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 556aa    MW: 61236.9 Da    PI: 7.9405
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65945.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-168703498
                  SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                  ++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v+v+r
  MLOC_65945.3  8 QEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAFVYL--RSETGEQRVGVRR 70
                  58999******************************************999..4477778999997 PP
2Auxin_resp95.86.8e-3296177183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   a+ha++t+s+F v+Y+Pr s+s+++v+v+k++ a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  d++p +W++S+W+sLk
  MLOC_65945.3  96 ASHAIKTNSIFVVYYRPRLSQSQYIVSVNKYHLASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDFSP-QWSGSEWKSLK 177
                   789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.758172IPR003340B3 DNA binding domain
SuperFamilySSF1019363.01E-19399IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-10470No hitNo description
Gene3DG3DSA:2.40.330.102.5E-20585IPR015300DNA-binding pseudobarrel domain
PfamPF023623.9E-14770IPR003340B3 DNA binding domain
PfamPF065078.6E-2896177IPR010525Auxin response factor
PfamPF023093.4E-7442490IPR033389AUX/IAA domain
PROSITE profilePS5174523.091452532IPR000270PB1 domain
SuperFamilySSF542776.38E-9453525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTMPTPTQEI ISKDLHGSEW RFKHIYRGQP RRHLLTTGWS TFVTSKKLMA GDAFVYLRSE  60
TGEQRVGVRR LVQKQSTMPA SVISSQSMHL GVLASASHAI KTNSIFVVYY RPRLSQSQYI  120
VSVNKYHLAS KTGFTVGMRF RMNFEAEDVP VKKFFGTIVG DGDFSPQWSG SEWKSLKVQW  180
DDSVAICNGP ERVSPWEIDS SDVSSPAIST LLQSSAKNKR PRETNENMNL PSQEPTQEFW  240
LSGVTQQHER TYVGSSDPNR ISGSGYHQIL WPSEHAGYGA MSSSSVCQTP LGLGDGWFKD  300
FNTSSQGVSP TLSEITQKLN RVASSEGRAP PPWATALCGG YRAEEPTSKL SCNATLPLPS  360
PLTEQVAPYL LKVAEKVKGP GMVRLFGVNL MENTNNAAAA TAGNASVGAG ETSARITGSV  420
EGSGQLSAFS KVTKVVNESP REIQSQQSSI GRNRVKVQMH GNAVGRAVDL ASLDGYERLT  480
NELEQMFEIK DIKQNFKVAF NDNEGDTMKV GDDPWMEFCR MVRKIVIYPI EDDKNMDPHQ  540
TSVFAAAPDE DLKANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-791199155353Auxin response factor 1
4ldw_A5e-791199155353Auxin response factor 1
4ldw_B5e-791199155353Auxin response factor 1
4ldx_A5e-791199155353Auxin response factor 1
4ldx_B5e-791199155353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65945.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLM0Y5S60.0M0Y5S6_HORVV; Auxin response factor
STRINGMLOC_65945.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.22e-97auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]