PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65555.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 351aa    MW: 37855.6 Da    PI: 6.3033
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65555.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.5e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll  +++ +G g+W++ ar+ g++Rt+k+c++rw++yl
     MLOC_65555.1 30 RGPWTLEEDNLLMSYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP
2Myb_DNA-binding50.83.9e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++ ++++++++G++ W++Ia++++ gRt++++k++w++
     MLOC_65555.1  83 RGNLTAEEQLVILELHAKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 126
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.792577IPR017930Myb domain
SuperFamilySSF466894.49E-3028124IPR009057Homeodomain-like
SMARTSM007172.2E-132979IPR001005SANT/Myb domain
PfamPF002498.5E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-233184IPR009057Homeodomain-like
CDDcd001674.62E-113277No hitNo description
PROSITE profilePS5129425.50378132IPR017930Myb domain
SMARTSM007171.8E-1482130IPR001005SANT/Myb domain
PfamPF002491.3E-1483126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2385131IPR009057Homeodomain-like
CDDcd001675.06E-1287126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSRRKGAAAA GGAGPMAMAA MEEEAAELRR GPWTLEEDNL LMSYIACHGE GRWNLLARCS  60
GLKRTGKSCR LRWLNYLKPD IKRGNLTAEE QLVILELHAK WGNRWSRIAQ HLPGRTDNEI  120
KNYWRTRVQK QARQLKVDAN SAVFRDAVRC YWMPRLLDKM SMAAASTAVP PPLLEQKQNC  180
HGVMSSSHSQ QSPAICGDQL GCYPAASFDP SPSASTSGST AAAALQPAPV PCFSELNWED  240
QYYYPGGGDL DGGGAGGLEL DSAALLGSLG LDGLDLGPAE SYIPDATLLD YLNYSSCTAN  300
AMNMMTTNGG NYYNNIYCGG DAMVDGDHHD PTTATTCHAA RKLAGEWGGG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-27271311104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164367.11e-175transcription factor MYB108-like
TrEMBLM0Y4940.0M0Y494_HORVV; Uncharacterized protein
STRINGMLOC_65555.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-76myb domain protein 62