PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65480.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 55aa    MW: 6034.83 Da    PI: 9.5779
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65480.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.81.4e-12127102128
           NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                   ++ktLvfykgrap+g+k+dW+mheyrl
  MLOC_65480.2   1 MRKTLVFYKGRAPHGHKSDWIMHEYRL 27 
                   89************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023652.9E-5127IPR003441NAC domain
PROSITE profilePS5100515.671155IPR003441NAC domain
SuperFamilySSF1019411.44E-11131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
MRKTLVFYKG RAPHGHKSDW IMHEYRLDDA VAIPSNPANP GAGAYYSGAS SPVFV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269|PubMed:16214898}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65480.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2491201e-81AK249120.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf17a09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149596.13e-22NAC domain-containing protein 43-like
SwissprotQ9M2742e-15NAC66_ARATH; NAC domain-containing protein 66
TrEMBLA0A287VJ642e-31A0A287VJ64_HORVV; Uncharacterized protein
TrEMBLA0A287VJF71e-31A0A287VJF7_HORVV; Uncharacterized protein
STRINGMLOC_65480.11e-30(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61910.17e-18NAC domain protein 66
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]