PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 38766.8 Da PI: 9.3605 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.7e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++Pw Lp+k++ +++ewyfF++rd+ky++g r+nra+ sgyWkatg+dk++ ++ + MLOC_65101.1 9 LPPGFRFHPTDEELILHYLRNRAAQSPCPV-SIIADVDIYKFDPWALPSKASYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPIRCSaT 104 79****************************.89***************988899**************************************99878 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ge vg+kk Lvfykgr pkg kt+W+mheyrl MLOC_65101.1 105 GESVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-63 | 5 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.475 | 9 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MIMSDPAMLP PGFRFHPTDE ELILHYLRNR AAQSPCPVSI IADVDIYKFD PWALPSKASY 60 GDREWYFFTP RDRKYPNGVR PNRAAGSGYW KATGTDKPIR CSATGESVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLAAAD AHAANTYRPM KFRNASMRLD DWVLCRIYKK TSQVSPMAVP 180 PLSDHELDEP SGAGAYPMSS AGMTMQGGAG GYTLQAAVPG TQRMPKIPSI SELLNDYSLA 240 QLFDDSGHAL MARHDQHAAL FGHPIMSQFH VNSSGNNMSQ LGQMDSPAST SVARDGAAGK 300 RKRLSEEDGE HNGSTSQPAA AVTNKKPNSS CFGATTFQVG NNTLQGSLGQ PLLHF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-72 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-72 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-72 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-72 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-72 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-72 | 9 | 172 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-72 | 9 | 172 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65101.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251058 | 0.0 | AK251058.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162550.1 | 0.0 | NAC transcription factor NAM-B1-like | ||||
Swissprot | K4BWV2 | 2e-87 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | M0Y2D5 | 0.0 | M0Y2D5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65101.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 3e-85 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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