PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64376.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 427aa MW: 47937.3 Da PI: 8.0342 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.3 | 2e-11 | 17 | 98 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l+lp kf++ +g + +++++l+ W+v++ ++ +g+++l+ GW++F++a++++ g f+v+ +dg++ l+vkvf+ MLOC_64376.8 17 KLRLPDKFTNVLNGRE--PREVKLREAGCrrPLWDVEI-VSDADGHMYLGHGWEQFAHAHDMRLGQFLVLNYDGHTV--LTVKVFDG 98 489*****96667664..557777775552267*****.566667789************************98555..59999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.533 | 3 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.69E-16 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.2E-10 | 6 | 99 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.78E-14 | 6 | 97 | No hit | No description |
Pfam | PF02362 | 6.7E-9 | 17 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-12 | 205 | 325 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-10 | 208 | 315 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.893 | 213 | 314 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.013 | 213 | 316 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.53E-8 | 213 | 295 | No hit | No description |
Pfam | PF02362 | 1.7E-7 | 214 | 310 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM 60 YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG 120 NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASEDS VDSANLQMLS 180 NNYVVSVQCY LTKAQKVKIA AIIEKIQSKI TVLVVQMKKS NVKRHANLVI RKDYALEHFP 240 REYTIVILQL PGKNKDWKGT FRIRPSGMSD AGRCNLYLGN FARDNHVREG DICLFQPMTN 300 VKQRRFLVKV HILHKVSIDG TTQSSARKRP DSDGCLKEDS SHNYKSANTP AVSYTSKEFS 360 EENPAADEVM ELDDLQTLSK DYVLSGKCDL TVAQGAKINA LVDKIRPQIP VLVVQMKKSS 420 STNGAIL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64376.8 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251585 | 0.0 | AK251585.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf123m20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198704.1 | 0.0 | B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A287MJM8 | 0.0 | A0A287MJM8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_64376.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 6e-12 | B3 family protein |