PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64376.13 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 417aa MW: 46931.4 Da PI: 8.8372 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.4 | 1.9e-11 | 17 | 98 | 15 | 99 |
-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l+lp kf++ +g + +++++l+ W+v++ ++ +g+++l+ GW++F++a++++ g f+v+ +dg++ l+vkvf+ MLOC_64376.13 17 KLRLPDKFTNVLNGRE--PREVKLREAGCrrPLWDVEI-VSDADGHMYLGHGWEQFAHAHDMRLGQFLVLNYDGHTV--LTVKVFDG 98 489*****96667664..557777775552267*****.566667789************************98555..59999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.533 | 3 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-15 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-16 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.88E-14 | 6 | 97 | No hit | No description |
SMART | SM01019 | 6.2E-10 | 6 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-9 | 17 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-12 | 186 | 306 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-10 | 189 | 296 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.893 | 194 | 295 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.83E-8 | 194 | 276 | No hit | No description |
SMART | SM01019 | 0.013 | 194 | 297 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-7 | 195 | 291 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM 60 YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG 120 NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASVQC YLTKAQKVKI 180 AAIIEKIQSK ITVLVVQMKK SNVKRHANLV IRKDYALEHF PREYTIVILQ LPGKNKDWKG 240 TFRIRPSGMS DAGRCNLYLG NFARDNHVRE GDICLFQPMT NVKQRRFLVK VHILHKVSID 300 GTTQSSARKR PDSDGCLKED SSHNYKSANT PAVSYTSKEF SEENPAADEV MELDDLQTLS 360 KDYVLSGKCD LTVAQGAKIN ALVDKIRPQI PVLVVQMKKS SSTNGAILTI KKDYAIK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64376.13 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251585 | 0.0 | AK251585.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf123m20, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198704.1 | 0.0 | B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A287MJJ6 | 0.0 | A0A287MJJ6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287MJL8 | 0.0 | A0A287MJL8_HORVV; Uncharacterized protein | ||||
STRING | MLOC_64376.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 5e-14 | B3 family protein |