PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64376.11
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 219aa    MW: 24864.2 Da    PI: 7.962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64376.11genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.15.5e-1217981599
                   -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3 15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                    l+lp kf++  +g +  +++++l+        W+v++ ++  +g+++l+ GW++F++a++++ g f+v+ +dg++   l+vkvf+ 
  MLOC_64376.11 17 KLRLPDKFTNVLNGRE--PREVKLREAGCrrPLWDVEI-VSDADGHMYLGHGWEQFAHAHDMRLGQFLVLNYDGHTV--LTVKVFDG 98
                   489*****96667665..557777775552267*****.566667789************************98555..59999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.533399IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-165101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-165101IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.2E-10699IPR003340B3 DNA binding domain
CDDcd100176.27E-14697No hitNo description
PfamPF023621.8E-91798IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEELEFFIIL LPNFWKKLRL PDKFTNVLNG REPREVKLRE AGCRRPLWDV EIVSDADGHM  60
YLGHGWEQFA HAHDMRLGQF LVLNYDGHTV LTVKVFDGSM CRRHYQHGND ASSGSSSDHG  120
NTFGEGEAPP RTGAKEDDGA QRISQMSNPC DSDGSQKERS FSSDEASVQC YLTKAQKVKI  180
AAIIEKIQSK ITVLVVQMKK SNVKRHANLV CKFYHLHFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64376.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2515850.0AK251585.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf123m20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198704.11e-106B3 domain-containing protein Os03g0620400-like
SwissprotQ10Q263e-28Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A287MJJ61e-152A0A287MJJ6_HORVV; Uncharacterized protein
STRINGMLOC_64376.11e-151(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-12B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]