PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C2H2 | ||||||||
Protein Properties | Length: 331aa MW: 36802 Da PI: 8.0435 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 10 | 30 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++sF++ +L H+ +H MLOC_64150.1 10 CKHCKRSFPSGASLGGHMAVH 30 ******************998 PP | |||||||
2 | zf-C2H2 | 19.3 | 3.1e-06 | 79 | 100 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C +sF +++ L H+rtH MLOC_64150.1 79 ECQLCFRSFASPDALSMHMRTH 100 6********************9 PP | |||||||
3 | zf-C2H2 | 14.6 | 9.7e-05 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg++F++ L H ++H MLOC_64150.1 239 YECKICGQVFTSGRALGGHRKRH 261 99*****************9999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.7E-5 | 6 | 34 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 8 | 35 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-7 | 8 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 8 | 30 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 10 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.157 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.7E-5 | 78 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.012 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.0E-4 | 79 | 100 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.43E-8 | 79 | 100 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.43E-8 | 234 | 261 | No hit | No description |
PROSITE profile | PS50157 | 10.658 | 239 | 262 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-8 | 239 | 261 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.018 | 239 | 261 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MPPRGRKHWC KHCKRSFPSG ASLGGHMAVH RNRRKKQPSR TPSIDGERYG LRERCQKTSW 60 LLDSVSSDDD RWALFPKTEC QLCFRSFASP DALSMHMRTH KRRRKMAVEH QAAVGDGDDL 120 NVPVPAAPVM RKKRSRRMVL DTVPSPVMEA YGMEEVDAAC ILVMLSGDHG MCPAFVDCGE 180 GGEMDDVAFD ALMTEMGLTS PDHHGPVGDN ELMEPEPSSS YEEVKFVSLS KVLKATANYE 240 CKICGQVFTS GRALGGHRKR HSFADHGRAP TVTKSEATQP CEELVPPDHR SLVLNLPSPS 300 IWNCNTARPK PEPNQLLVAS SLWDERMLGV I |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232783.1 | 1e-130 | uncharacterized protein LOC104582938 | ||||
TrEMBL | A0A3B6INY2 | 0.0 | A0A3B6INY2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RUF0 | 0.0 | A0A446RUF0_TRITD; Uncharacterized protein | ||||
STRING | MLOC_64150.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14367 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 7e-08 | C2H2-like zinc finger protein |