PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_64014.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Trihelix

Protein Properties

Length: 297aa MW: 32155.9 Da PI: 8.9118

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_64014.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	90.8	1.5e-28	44	131	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr...tsessstcpyfdqle 86 W ++e+l Li++rrem+++++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk + ++++ + + s +++y+++++ MLOC_64014.1 44 WVQDETLSLIALRREMDNHFNTSKSNKHLWEAISAKMREQGFDRSPTMCTDKWRNLLKEFKKARSHARSSggaSGNGSAKMAYYKEID 131 ****************************************************************998875444567788999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.386	36	100	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.0E-4	36	104	IPR009057	Homeodomain-like
SMART	SM00717	6.6E-5	40	102	IPR001005	SANT/Myb domain
CDD	cd12203	1.51E-29	42	107	No hit	No description
Pfam	PF13837	7.1E-20	43	133	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MLLAGPQPPT PSLLLPESSG EDGGAHDHDS SSRASAPKKR AETWVQDETL SLIALRREMD 60 NHFNTSKSNK HLWEAISAKM REQGFDRSPT MCTDKWRNLL KEFKKARSHA RSSGGASGNG 120 SAKMAYYKEI DDLLKRRGKA ASSPAGSGGG GGAAKSPTPT SKIESYLQFA DKGFEDANIP 180 FGPVEASHPI ALTTADAVAT NGVNPWNWRD TSTNGGDNHG TYGGRVILVK WGDYTKRIGI 240 DGTAEAIKEA IKSAFGLRTR RAFWLEDEDE VVRSLDRDMP VGIYALHLDN VIGKSGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-44	38	129	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_64014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353943	0.0	AK353943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195254.1	0.0	trihelix transcription factor GT-4-like
Swissprot	Q9FX53	1e-122	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	F2CQP1	0.0	F2CQP1_HORVV; Predicted protein
STRING	MLOC_64014.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-103	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]